Greetings!
It sounds like you have things pretty well set up. As far as resistor tolerances are concerned, your measurements are never going to be any better than the worst case tolerance. Do you have an independent means of testing a single strain gauge before you start mass producing them? You can probably do any final calibration in Labview.
One final thought. Are you using a differential mode on your daq cards? You might want to experiment with differential, NRSE, NRE modes, for the lowest noise system.
Also, be sure your excitation signal is not sufficient to actually heat up the resistors. In other words, pay attention to the POWER rating of the resistors as well as their values. It's worth a day or two on the bench to check this out!
Good luck!
Eric
Eric P. Nichols
P.O. Box 56235
North Pole, AK 99705