There are different things you might try, each with pros and cons.
1. If the signals being measured are repetitive over time and you don't need to repeat your 12 measurements at a rapid rate, you could choose to create, run, and stop 12 separate tasks in a loop. Each task would contain only 1 channel at a time. This method will have significant overhead, but you can get there from here pretty easily.
2. If the signals are periodic or repetitive, you can use aliasing to your advantage by purposely undersampling. Ideally, you want a "mutually prime" type of relationship between the sampling rate and the signal frequency -- this way when you take lots of samples across many cycles of your signal, the samples will be spread across different phase points of the repeating signal. With this method, you'll collect samples at a lower rate so you'll need more total sampling time.
-Kevin P.
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