Hello,
If I understand your question correctly, you want to be able to control the front panel of your FPGA VI simultaneously from FPGA VI and the HOST VI. That's not possible but at the same time it shouldn't be necessary.
The only way you can run the FPGA VI directly is when you're targeting the RIO device. The FPGA VI is not going to run if you're targeting windows. In that case you should use the HOST VI to remotely control the FPGA VI. Since LabVIEW can only target windows or RT at any time, HOST and FPGA VIs can not run simultanously.
Hope this helps!
Best regards,
Yusuf C
Application Engineer
National Instruments