Hi asdkamps,
the idea to use notifiers to synchronize loops is good. As I wrote last time it is not possible to check your VI withou having exact knowledges about your points of view. Therefore I would like to give you some additional ressources that can provide you mor informations to be able to check your programm.
The first one is an example for VISA events
VISA Serial Events
http://sine.ni.com/apps/we/niepd_web_display.display_epd4?p_guid=B45EACE3EF5B56A4E034080020E74861&p_node=DZ52363&p_source=External
The second one is an example for waiting on all notifiers.
Wait for All Notifiers
http://sine.ni.com/apps/we/niepd_web_display.display_epd4?p_guid=B500C6E7AB0422E1E034080020E74861&p_node=DZ52071&p_source=External
Additionally I want to suggest you to have a look at the NI examples that are included in LabVIEW. A good example is the "General Notifier Example". Please have a look there to get the neccessary knowledge in order to debug your project.
Best regards,
Carsten Sprung
AE, National Instruments Germany