Hey checkers,
I've seen the problem as well--it happens to me about 5% of the time when I am debugging, and checking variables, etc. Sometimes I get the CVI window title bar (with minimize buttons) but the menu and tool bars are white (no text). Sometimes the CVI source window is all white and sometimes I see my code. Regardless, I always see something like you showed in the PDF where the project and library trees are not drawn at all (and some other window shows thru). I also discovered the minimize/maximize trick to get it to redraw properly.
I certainly have my personal share of complaints about the CVI 7 IDE, and it is extremely frustrating when development software misbehaves because, well, it makes our job hard or impossible. But one thing that you will learn about working with NI is that once they reproduce the problem, they put 'boots' onto the problem to get it fixed. Every software and hardware has bugs, but it is the support follow-thru that makes me happy to work with NI.
The next time I see the problem, I'll make some notes and start a SR ticket. You should do the same, along with any others out there that see it.
Good luck,
Orlan