Hi,
I'm having kind of the same problem.
I'm re-arranging my working directory to have \SRC, \H, and \BIN directories, so I can just copy away my \BIN directory and have a full working app. I had to create a new project after re-arranging all, and then added all the files again. My problem comes when sepparating my 
file.uir from its associated 
file.hI need to put the 
file.uir inside the \BIN directory so that the 
file.exe can execute outside my project, but I don't want to have the 
file.h in that \BIN drectory (I want it to stay in \H directory). I haven't found a way to associate one 
file.uir with a 
file.h in another directory, just adding them both to the proyect doesn't seem to work, as when I save the project it creates a new file.h in the \BIN directory.
Any help on the matter would be much appreciated.
Thanks,
Daniel