This could be a thread issue. NI-DAQ 6.x is a single thread driver. If that thread happens to be shared with IMAQ, there could be some starvation. You should be able to change your VI execution properties so that the DAQ VIs run in a separate DAQ thread. NI-IMAQ is a multi-thread driver, as is DAQmx (DAQ 7). If your DAQ device is an E series or MIO board, you should try upgrading to DAQmx. (It shouldn't cost anything, if you have LabVIEW 7 Express).
KyleV