I would recommend trying to increase the number of pull-in moves yu perform. To do this, you should upgrade to the FlexMotion 5.1.xf4 patch which has the added functionality to change the number of pull-in moves. Here is a link if on our ftp site:
ftp://ftp.ni.com/support/motion/Software/PC/FlexMotion/
In the readme.txt, there is a description of how to use this function depending on what progamming environment you are working in.
Jack Arnold
Application Engineer
National Instruments