Hi, Ivan,
Thank you for the additional information.
There is no reason your motors should behave so differently in Motion Assistant. My guess is that the same or at least similar problems exist in MAX. However, if you are doing very simple moves in MAX but a more complicated algorithm in Motion Assistant, the motors may not be running long enough in MAX for the problem to appear. To verify this, try doing a velocity move in MAX and monitor the following error as well as your motors to see if they overheat.
Best regards,
Dawna