These blips can occur when writing to a digital port, and not masking the bits you do not wish to change.
If these blips are causing problems, take a look at the Write to Digital Port.VI. Double click on its icon to open its front panel. Go to its block diagram. You'll see where the port is configured on iteration 0, and then the Port Write is called, and there is an input to mask lines. This is what you'll need to do--put a value on this input to mask lines you want to remain the same. This should fix the blips you are seeing.
Also, if you are not manipulating more than one digital line at a time, you could use the Write to Digital Line.VI, which would accomplish the same thing. But if you need to update more than one line at the exact same ti
me, this method won't work for you.
Mark