Based on the tests you have run, I agree that the problem is
most likely going to be the SCXI chassis or the DAQ board since
multiple analog input modules are having the same issues.
If the problem is with the chassis, then it might be a blown fuse.
Check out this SCXI fuse guide:
http://digital.ni.com/public.nsf/websearch/e8064c591c5fda1a86256a4d00817c1c?OpenDocument
You should specifically check out the state of the Auxillary
Backplane Fuses using a handheld DMM, because from the symptoms you are
describing those are the only fuses that would cause these issues.
If the problem is not with the SCXI chassis, then you should try to get
a hold of a terminal block for your DAQ board and test it separately
from the SCXI chassis to see if you read similar offsets.
I hope this helps.
-Logan