Hi immortalc,
I'm not sure excel is very suited to doing this type of calculation. You could definitely use LabVIEW to analyze the data. Since your data was sampled at 100kHz the time between each sample is 1/100k or 10 uS. You could then count the number of samples in each low period and times it by 10uS to calculate the low pulse width.
If your DAQ hardware has a counter available you can make a pulse width measurement in hardware using a counter input task. A great example of this can be found in the NI Example Finder. In LabVIEW go to Help >> Find Examples... >> Hardware Input and Output >> DAQmx >> Counter Measurements >> Meas Pulse Width-Buffered-Cont.vi. If you are measuring 3 axis then you would need a counter for each one.
Let me know if you have any questions and take care.
Thanks,
Nathan
NI Chief Hardware Engineer