Hi Waugh,
I was able to find these explained well in the DIO-96 manual.
On the PCI-DIO-96, all of the 100 kohm bias resistors pull up. Therefore, the default power-up state of each line on the PCI-DIO-96 is high.
You can change individual lines from pulled up to pulled down by adding your own external resistors.
You would need to connect a resistor of 7.1kohms from the digital line to ground to obtain values of 0.4V and still pull down the line. Page 3.13 explains the procedure. It also explains why you would need a 7.1kohm resistor. Hope that helps.
PCI-DIO-96/PXI�-6508/PCI-6503 User Manual
http://www.ni.com/pdf/manuals/320938c.pdf
Ron