DAQmx Clear Task should not turn off IEPE current. You will have to explicity set IEPE current to On (for that channel) whenever you use any of the AI channels on your 4474 in order to keep the IEPE On because the IEPE for all channels in the AI subsystem will be set to the default state (Off) unless explicitly configured. That said, if you clear a task that had IEPE On, and then initialize a new task and set IEPE On, the IEPE will be uninterrupted and there should be no need to wait for the IEPE to settle. Other components of your measurement system might need time to settle if their state was changed between tasks (DUT, sensor, AC coupling, etc.)
Doug
Enthusiast for LabVIEW, DAQmx, and Sound and Vibration