Oliver,
in the example you mention two RTSI lines are used. RTSI0 carries the 10 MHz clock to synchronize the board clocks using PLL. It really doesn't matter which board is configured first to synchronize on this signal. RTSI1 carries the trigger signal generated by the master to start the acquisition on the slave.
As there is a board specific propagation delay you can add an additionial propagation delay in this example. Before starting your real measurements you should determine this delay by applying the same signal to both boards and aligning them with this parameter.
All this information and more can be found in the online help of the vi, in the descriptions in the diagram and in the online help of the front panel elements.
Best regards,
Jo
chen Klier
NI-Germany
[SRQ 212122]