The I/O Assistant is not capable of accepting inputs. There are a couple options that you have.
One is to convert the assistant in a normal VI by right click on it and selecting Open Front Panel. You can then modify it to add a control wired to the connector and then use that.
The second option will take a bit more work but I think might pay off in the long run. What you can do is leverage your knowledge of the instrument and commands a create a true LabVIEW instrument driver. There a couple of links on the
on how to develop one. The advantage of a driver is that it's more flexible and portable. If you then go ahead and submit it to NI, others can benefit from your e
ffort.
p.s. I'm assuming you've already checked for the existance of a driver at the site above.