The maximum frequency for onboard reenabled breakpoints is clearly below 1 kHz.
The new
PCI-7350 series motion control boards (e. g. the PCI-7354) have an auto-reenable feature for the breakpoint circuitry and they are capable of generating breakpoints at a rate of up to 4 MHz. So maybe switching to this board would be the best and easiest solution for your application.
Best regards,
Jochen Klier
NI-Germany