You cannot create a task to encompass the two channels as one. You will have to just perform this calculation in software. However, there are also LVDT to DC converters that you can use as signal conditioning before connecting to your DAQ card. The only LVDT signal conditioning that National Instruments has is in the SCXI platform.
http://digital.ni.com/public.nsf/websearch/BEE5506E0358E82186256B9200701ECA?OpenDocument
Garrett H
National Instruments