Hello Jamie.
I checked the 1303 manual and saw what you are talking about. The manual says "Connecting an external ground-referenced signal with the 10 ohm bias resistor network in place can cause permanent damage to the resistor network and the traces on the SCXI-1303 printed circuit board." It appears that this is exactly what happened and your board is probably damaged accordingly. I would recommend contacting National Instruments to get this board repaired. This can be done by following the procedure outlined at:
Sending a National Instruments Board in for Repair or Calibration
Have a great day and feel free to give us a call when you wish to return your card!
Brian F
Applications Engineer
National Instruments